PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_32308-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 350aa    MW: 38260.2 Da    PI: 6.6284
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_32308-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-08158200754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + E++RR+r+ ++f  L  l+P++     +K + a++   A+eYI++L
  TRIUR3_32308-P1 158 KKEKQRRQRLSEKFTALMLLIPNR-----TKEDRATVIYDAIEYIQEL 200
                      57*********************9.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.357151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-6157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6158200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-9160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-10160221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.32E-8160200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MYHQQCELLM PHEGLDMDAG QSHHLAAGSA VPAELNFHLL SYVDTAVSPQ QPTVEYFFGG  60
ADQPHAQFEQ LAANHQAMTV LRDYYGQYHP ATADAYLPGG GPRTGSSSLV FGAAEEESAY  120
MVGGFQCSPK PRASGSRKRG RGAGSSFHGF PANGGVEKKE KQRRQRLSEK FTALMLLIPN  180
RTKEDRATVI YDAIEYIQEL GRTVEELTLL VEKKRGRREH QGDVVDPAPT LVAGDGECSA  240
GEVAAAVMPA MPAPPQPIRS TYIQRRSKET FVDVRIVEDE VNIKLTKRRR DGCLAAASRA  300
LDDLHLDLVH LSGGKIGDCH IYMFNTKIHP GSPVFASAVA SKLIEVVDEY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068501e-119AK106850.1 Oryza sativa Japonica Group cDNA clone:002-118-A11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567568.11e-166PREDICTED: transcription factor TIP2-like
SwissprotQ5JNS01e-157TIP2_ORYSJ; Transcription factor TIP2
TrEMBLM7YSI10.0M7YSI1_TRIUA; Transcription factor bHLH89
STRINGMLOC_71056.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.23e-36bHLH family protein